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Open Scientific Visualization Datasets

3DNeurons15Sept2016 The neurons are macaque visual cortical neurons labeled with TdTomato fluorescent proteins. 2048x2048x2384 (18.6 GB) Download
AcknowledgementAlessandra Angelucci and Frederick Federer. This work was supported by grants from the National Institute of Health (NEI R01 EY019743 and R01 EY026812), the National Science Foundation (EAGER 1649923).
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Aneurism Rotational C-arm x-ray scan of the arteries of the right half of a human head. A contrast agent was injected into the blood and an aneurism is present. 256x256x256 (16.0 MB) Download
AcknowledgementPhilips Research, Hamburg, Germany
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Backpack Scan CT scan of a backpack filled with items. 512x512x373 (186.5 MB) Download
AcknowledgementKevin Kreeger, Viatronix Inc., USA
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Bonsai CT scan of a bonsai tree. 256x256x256 (16.0 MB) Download
AcknowledgementS. Roettger, VIS, University of Stuttgart
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Boston Teapot CT scan of the SIGGRAPH 1989 teapot with a small version of the AVS lobster inside. 256x256x178 (11.1 MB) Download
AcknowledgementTerarecon Inc, MERL, Brigham and Women's Hospital
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Bunny A CT scan of the Stanford Bunny. The greyscale units are Hounsfield units, denoting electron-density of the subject; the scale units are in millimeters. The scan was completed 28 January 2000. 512x512x361 (180.5 MB) Download
AcknowledgementMany many thanks to Geoff Rubin who helped me to scan the data, Sandy Napel who coordinated the scan and helped to process the data, and Marc Levoy who graciously provided the subject. Geoff and Sandy are with Stanford Radiology, and Marc is with Stanford Computer Science.
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Christmas Tree The Christmas tree model was scanned with a Siemens Somatom Plus 4 Volume Zoom Multislice-CT scanner at the general hospital in Vienna. 512x499x512 (249.5 MB) Download
AcknowledgementArmin Kanitsar, 2002
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CSAFE Heptane Gas A single time step from a computational simulation of a jet of heptane gas undergoing combustion. 302x302x302 (26.3 MB) Download
AcknowledgementThe University of Utah Center for the Simulation of Accidental Fires and Explosions.
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Engine CT scan of two cylinders of an engine block. 256x256x128 (8.0 MB) Download
AcknowledgementGeneral Electric
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Foot Rotational C-arm x-ray scan of a human foot. Tissue and bone are present in the dataset. 256x256x256 (16.0 MB) Download
AcknowledgementPhilips Research, Hamburg, Germany
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Fuel Simulation of fuel injection into a combustion chamber. The higher the density value, the less presence of air. 64x64x64 (256.0 KB) Download
AcknowledgementSFB 382 of the German Research Council (DFG)
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Hydrogen Atom Simulation of the spatial probability distribution of the electron in an hydrogen atom, residing in a strong magnetic field. 128x128x128 (2.0 MB) Download
AcknowledgementSFB 382 of the German Research Council (DFG)
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Kingsnake Scan of a Lampropeltis getula egg (captive bred by Travis LaDuc; laid on 7 July 2003, growth terminated on 29 August 2003, 54 days after oviposition) for Dr. Timothy Rowe of the Department of Geological Sciences, The University of Texas at Austin. 1024x1024x795 (795.0 MB) Download
AcknowledgementDigiMorph.org, The University of Texas High-Resolution X-ray CT Facility (UTCT), and NSF grant IIS-9874781
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Lobster CT scan of a lobster contained in a block of resin. 301x324x56 (5.2 MB) Download
AcknowledgementVolVis distribution of SUNY Stony Brook, NY, USA
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Magnetic Reconnection Simulation A single time step from a computational simulation of magnetic reconnection. 512x512x512 (512.0 MB) Download
AcknowledgementBill Daughton (LANL) and Berk Geveci (KitWare). Please acknowledge paper http://arxiv.org/abs/1405.4040.
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Neurons in Marmoset Visual Cortex Pyramidal neurons in the marmoset primary visual cortex (V1) labeled with green fluorescent protein (GFP) after injection of a psuedotyped G-deleted rabies virus in area V2. The tissue was cleared using the Sca/e technique and imaged on a Olympus 2-photon microscope at 20x magnification. 1024x1024x314 (314.0 MB) Download
AcknowledgementFrederick Federer, Moran Eye Institute, University of Utah
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Marschner-Lobb High frequencies where 99% of the sinusoids are right below the Nyquist frequency. 41x41x41 (67.3 KB) Download
AcknowledgementMarschner and Lobb
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Rayleigh-Taylor Instability A time step of a density field in a simulation of the mixing transition in Rayleigh-Taylor instability. 1024x1024x1024 (4.0 GB) Download
AcknowledgementAndrew W. Cook, William Cabot, and Paul L. Miller
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Head MRI CISS 1.5T MRT 3D CISS dataset of a human head that highlights the CSF (Cerebro-Spinal-Fluid) filled cavities of the head. 256x256x124 (7.8 MB) Download
AcknowledgementDirk Bartz, VCM, University of Tübingen, Germany
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Head MRT Angiography 3T MRT Time-of-Flight Angiography dataset of a human head. The dataset has been resampled into an isotropic voxel grid (hence the peculiar slice size). 416x512x112 (45.5 MB) Download
AcknowledgementÖzlem Gürvit, Institute for Neuroradiology, Frankfurt, Germany
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Neghip Simulation of the spatial probability distribution of the electrons in a high potential protein molecule. 64x64x64 (256.0 KB) Download
AcknowledgementVolVis distribution of SUNY Stony Brook, NY, USA
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Neocortical Layer 1 Axons Axons in layer 1 of the mouse barrel cortex imaged in vivo. 1464x1033x76 (109.6 MB) Download
AcknowledgementV De Paola, MRC Clinical Sciences Center, Imperial College London
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Nucleon Simulation of the two-body distribution probability of a nucleon in the atomic nucleus 16O if a second nucleon is known to be positioned at r'=(2 fm,0,0). 41x41x41 (67.3 KB) Download
AcknowledgementSFB 382 of the German Research Council (DFG)
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Pancreas First scan. The National Institutes of Health Clinical Center performed 82 abdominal contrast enhanced 3D CT scans (~70 seconds after intravenous contrast injection in portal-venous) from 53 male and 27 female subjects. Seventeen of the subjects are healthy kidney donors scanned prior to nephrectomy. The remaining 65 patients were selected by a radiologist from patients who neither had major abdominal pathologies nor pancreatic cancer lesions. Subjects' ages range from 18 to 76 years with a mean age of 46.8 ± 16.7. The CT scans have resolutions of 512x512 pixels with varying pixel sizes and slice thickness between 1.5 − 2.5 mm, acquired on Philips and Siemens MDCT scanners (120 kVp tube voltage). A medical student manually performed slice-by-slice segmentations of the pancreas as ground-truth and these were verified/modified by an experienced radiologist. 240x512x512 (120.0 MB) Download
AcknowledgementRoth HR, Lu L, Farag A, Shin H-C, Liu J, Turkbey EB, Summers RM. DeepOrgan: Multi-level Deep Convolutional Networks for Automated Pancreas Segmentation. N. Navab et al. (Eds.): MICCAI 2015, Part I, LNCS 9349, pp. 556–564, 2015.
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Pawpawsaurus Campbelli This specimen, the holotype, was collected from the Paw Paw Formation, SMU Loc. No. 263, Tarrant County, Texas. The specimen was scanned along the coronal axis for a total of 1088 slices. Voxel size is 0.2275 mm. 958x646x1088 (1.3 GB) Download
AcknowledgementMatthew Colbert, 4 February 2014
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Cardiac Volume (Porcine) Volumes were obtained by way of computed tomography (CT) imaging on excised, postmortem porcine hearts. Alginate curing agents were injected into ventricles to provide rigidity and radiopaque agents were injected into the coronary arteries to distinguish microvasculature from the rest of the tissue. 2048x2048x2612 (20.4 GB) Download
AcknowledgementExperiments were performed by the Cardiovascular Research and Training Institute (CVRTI) and the Scientific Computing and Imaging (SCI) Institute at the University of Utah with funding from the Nora Eccles Treadwell foundation and the NIH/NIGMS Center of Integrative Biomedical Computing under grant P41 GM103545-17.
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Christmas Present An industrial CT scan of a christmas present. 492x492x442 (204.1 MB) Download
AcknowledgementChristoph Heinzl, 2006
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Colon Prone CT scan of abdomen in prone orientation (back faces ceiling, belly faces table. 512x512x463 (231.5 MB) Download
AcknowledgementWalter Reed Army Medical Center, USA
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Richtmyer-Meshkov Instability Entropy field (timestep 160) of Richtmyer-Meshkov instability simulation. 2048x2048x1920 (7.5 GB) Download
AcknowledgementThree-dimensional simulation of a Richtmyer–Meshkov instability with a two-scale initial perturbation, Ronald H. Cohen, William P. Dannevik, Andris M. Dimits, Donald E. Eliason, Arthur A. Mirin, and Ye Zhou
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Shockwave 64x64x512 (2.0 MB) Download
Acknowledgement
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Silicium Simulation of a silicium grid. 98x34x34 (110.6 KB) Download
AcknowledgementVolVis distribution of SUNY Stony Brook, NY, USA
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Skull Rotational C-arm x-ray scan of phantom of a human skull. 256x256x256 (16.0 MB) Download
AcknowledgementSiemens Medical Solutions, Forchheim, Germany
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Spathorhynchus Fossorium This specimen, the holotype, was collected from the Middle Eocene Green River Formation of Sweetwater County, Wyoming on 27 July 1967 by Frank L. Pearce. The specimen was scanned along the coronal axis for a total of 750 slices. Each 1024x1024 pixel slice is 0.047 mm thick, with an interslice spacing of 0.047 mm and a field of reconstruction of 22 mm. 1024x1024x750 (1.5 GB) Download
AcknowledgementMatthew Colbert, 17 February 2005
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Stag Beetle The stag beetle from Georg Glaeser, Vienna University of Applied Arts, Austria, was scanned with an industrial CT by Johannes Kastner, Wels College of Engineering, Austria, and Meister Eduard Gröller, Vienna University of Technology, Austria. 832x832x494 (652.2 MB) Download
AcknowledgementMeister Eduard Gröller, Georg Glaeser, Johannes Kastner, 2005
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Leg of Statue CT scan of a leg of a bronze statue. 341x341x93 (10.3 MB) Download
AcknowledgementGerman Federal Institute for Material Research and Testing (BAM), Berlin, Germany
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Stented Abdominal Aorta CT Scan of the abdomen and pelvis. The dataset contains also a stent in the abdominal aorta. No contrast agent was used to enhance the blood vessels. 512x512x174 (87.0 MB) Download
AcknowledgementMichael Meißner, Viatronix Inc., USA
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Isotropic Turbulence The data set represents a time step from an isotropic turbulence simulation. A single variable, enstrophy, is represented on a Cartesian grid. 256x256x256 (64.0 MB) Download
AcknowledgementData set provided by Gregory D. Abram and Gregory P. Johnson, Texas Advanced Computing Center, The University of Texas at Austin. Simulation by Diego A. Donzis, Texas A&M University, P.K. Yeung, Georgia Tech.
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Tooth 103x94x161 (1.5 MB) Download
Acknowledgement
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Head Aneurism Rotational angiography scan of a head with an aneurysm. Only contrasted blood vessels are visible. 512x512x512 (256.0 MB) Download
AcknowledgementMichael Meißner, Viatronix Inc., USA
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