WebGL 2 is not supported; try recent Firefox or Chrome.

This website is possible due to generous support from SCI Institute and NSDF. The previews are compressed using the ZFP library.

Please, cite individual datasets to support authors (some have BibTeX).

All datasets are in little-endian byte order. Dimensions are width x height x depth (e.g., array[depth][height][width] in C).

Data contributions can be made by emailing us the dataset along with its description.

3DNeurons15Sept2016 The neurons are macaque visual cortical neurons labeled with TdTomato fluorescent proteins. 2048x2048x1718 (13.4 GB) Download
DescriptionThe neurons are macaque visual cortical neurons labeled with TdTomato fluorescent proteins.
MetadataNRRD (detached header)
AcknowledgementAlessandra Angelucci and Frederick Federer. This work was supported by grants from the National Institute of Health (NEI R01 EY019743 and R01 EY026812), the National Science Foundation (EAGER 1649923).
Data typeuint16
Spacing0.267345x0.267345x0.5
SHA-512d70e869662ca81ac3c8b8eafe9eb415b8b78edb417a7c84a5cc51906ec4f3f7de8c1ff1bf676a04b7c6e06ca7d033177ecd8526efe95aced3021d83c08dbd8fe
Neurons in Marmoset Visual Cortex Pyramidal neurons in the marmoset primary visual cortex (V1) labeled with green fluorescent protein (GFP) after injection of a psuedotyped G-deleted rabies virus in area V2. The tissue was cleared using the Sca/e technique and imaged on a Olympus 2-photon microscope at 20x magnification. 1024x1024x314 (314.0 MB) Download
DescriptionPyramidal neurons in the marmoset primary visual cortex (V1) labeled with green fluorescent protein (GFP) after injection of a psuedotyped G-deleted rabies virus in area V2. The tissue was cleared using the Sca/e technique and imaged on a Olympus 2-photon microscope at 20x magnification.
MetadataNRRD (detached header)
AcknowledgementFrederick Federer, Moran Eye Institute, University of Utah
Data typeuint8
Spacing0.497x0.497x1.5
SHA-512c13b2495e3ce2e0d7969ecf5316351a58e6aa8eeeaf23b22d0dc0b397ed22b51a5f88fd94e272a8a1add0414c69960406847b3b9e4854497a026e25e0d567e95
Neocortical Layer 1 Axons Axons in layer 1 of the mouse barrel cortex imaged in vivo. 1464x1033x76 (109.6 MB) Download
DescriptionAxons in layer 1 of the mouse barrel cortex imaged in vivo.
BibTeX
@article{neocortical_layer_1_axons,
	title = {Cell type-specific structural plasticity of axonal branches and boutons in the adult neocortex},
	author = {De Paola, Vincenzo and Holtmaat, Anthony and Knott, Graham and Song, Sen and Wilbrecht, Linda and Caroni, Pico and Svoboda, Karel},
	journal = {Neuron},
	volume = {49},
	number = {6},
	pages = {861--875}
	year = {2006},
	doi = {10.1016/j.neuron.2006.02.017},
}
MetadataNRRD (detached header)
AcknowledgementV De Paola, MRC Clinical Sciences Center, Imperial College London
Data typeuint8
Spacing1x1x3.4
SHA-5129c4b596a0682c42d1ed30f4d1da84098b1f13a03fb51ed1da3e57871b59fa7ad82bbacd3c08e1b951ddfec4e19bfcbb3493b1488769a3f2effa1369560d9f80d