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import OpenVisus as ov dataset = ov.load_dataset("", cache_dir=".") data = dataset.read(x=(,), y=(,), z=(,))

Please, cite individual datasets to support authors (some have BibTeX). Backup is hosted by SCI Institute and NSDF project.

All datasets are in little-endian byte order. Dimensions are width x height x depth (e.g., array[depth][height][width] in C).

Data contributions can be made by emailing us the dataset along with its description.

3DNeurons15Sept2016 The neurons are macaque visual cortical neurons labeled with TdTomato fluorescent proteins. 2048x2048x1718 (13.4 GB) Download
DescriptionThe neurons are macaque visual cortical neurons labeled with TdTomato fluorescent proteins.
BibTeX

    
MetadataNRRD (detached header)

    
AcknowledgementAlessandra Angelucci and Frederick Federer. This work was supported by grants from the National Institute of Health (NEI R01 EY019743 and R01 EY026812), the National Science Foundation (EAGER 1649923).

    
Data typeuint16

    
Spacing0.267345x0.267345x0.5

    
SHA-512d70e869662ca81ac3c8b8eafe9eb415b8b78edb417a7c84a5cc51906ec4f3f7de8c1ff1bf676a04b7c6e06ca7d033177ecd8526efe95aced3021d83c08dbd8fe








    Neocortical Layer 1 Axons
    Axons in layer 1 of the mouse barrel cortex imaged in vivo.
    1464x1033x76 (109.6 MB)
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DescriptionAxons in layer 1 of the mouse barrel cortex imaged in vivo.

    
BibTeX
@article{neocortical_layer_1_axons,
    title = {Cell Type-Specific Structural Plasticity of Axonal Branches and Boutons in the Adult Neocortex},
    author = {De Paola, Vincenzo and Holtmaat, Anthony and Knott, Graham and Song, Sen and Wilbrecht, Linda and Caroni, Pico and Svoboda, Karel},
    journal = {Neuron},
    volume = {49},
    number = {6},
    pages = {861--875},
    year = {2006},
    doi = {10.1016/j.neuron.2006.02.017},
}

    
MetadataNRRD (detached header)

    
AcknowledgementV De Paola, MRC Clinical Sciences Center, Imperial College London

    
Data typeuint8

    
Spacing1x1x3.4

    
SHA-5129c4b596a0682c42d1ed30f4d1da84098b1f13a03fb51ed1da3e57871b59fa7ad82bbacd3c08e1b951ddfec4e19bfcbb3493b1488769a3f2effa1369560d9f80d








    Neurons in Marmoset Visual Cortex
    Pyramidal neurons in the marmoset primary visual cortex (V1) labeled with green fluorescent protein (GFP) after injection of a psuedotyped G-deleted rabies virus in area V2. The tissue was cleared using the Sca/e technique and imaged on a Olympus 2-photon microscope at 20x magnification.
    1024x1024x314 (314.0 MB)
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DescriptionPyramidal neurons in the marmoset primary visual cortex (V1) labeled with green fluorescent protein (GFP) after injection of a psuedotyped G-deleted rabies virus in area V2. The tissue was cleared using the Sca/e technique and imaged on a Olympus 2-photon microscope at 20x magnification.

    
BibTeX

    
MetadataNRRD (detached header)

    
AcknowledgementFrederick Federer, Moran Eye Institute, University of Utah

    
Data typeuint8

    
Spacing0.497x0.497x1.5

    
SHA-512c13b2495e3ce2e0d7969ecf5316351a58e6aa8eeeaf23b22d0dc0b397ed22b51a5f88fd94e272a8a1add0414c69960406847b3b9e4854497a026e25e0d567e95