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Open Scientific Visualization Datasets

Datasets are generously hosted by the Scientific Computing and Imaging Institute. The previews are compressed using the ZFP library.

Please, cite individual datasets, if they have BibTeX, to support authors.

All datasets are in little-endian byte order. Dimensions are width x height x depth (e.g., array[depth][height][width] in C).

Data contributions can be made by emailing us the dataset along with its description.

3DNeurons15Sept2016 The neurons are macaque visual cortical neurons labeled with TdTomato fluorescent proteins. 2048x2048x2384 (18.6 GB) Download
DescriptionThe neurons are macaque visual cortical neurons labeled with TdTomato fluorescent proteins.
MetadataNRRD (detached header)
AcknowledgementAlessandra Angelucci and Frederick Federer. This work was supported by grants from the National Institute of Health (NEI R01 EY019743 and R01 EY026812), the National Science Foundation (EAGER 1649923).
Data typeuint16
Spacing0.267345x0.267345x0.5
SHA-512578854b1e8d368e7b5084cd81bf23d648a8ce63d648dcbe705f465abbb9396d684b3647c389840f671d7a2f5b2cd3676103dda4967e40f418e2b08b73f3ac318
Neurons in Marmoset Visual Cortex Pyramidal neurons in the marmoset primary visual cortex (V1) labeled with green fluorescent protein (GFP) after injection of a psuedotyped G-deleted rabies virus in area V2. The tissue was cleared using the Sca/e technique and imaged on a Olympus 2-photon microscope at 20x magnification. 1024x1024x314 (314.0 MB) Download
DescriptionPyramidal neurons in the marmoset primary visual cortex (V1) labeled with green fluorescent protein (GFP) after injection of a psuedotyped G-deleted rabies virus in area V2. The tissue was cleared using the Sca/e technique and imaged on a Olympus 2-photon microscope at 20x magnification.
MetadataNRRD (detached header)
AcknowledgementFrederick Federer, Moran Eye Institute, University of Utah
Data typeuint8
Spacing0.497x0.497x1.5
SHA-512c13b2495e3ce2e0d7969ecf5316351a58e6aa8eeeaf23b22d0dc0b397ed22b51a5f88fd94e272a8a1add0414c69960406847b3b9e4854497a026e25e0d567e95
Neocortical Layer 1 Axons Axons in layer 1 of the mouse barrel cortex imaged in vivo. 1464x1033x76 (109.6 MB) Download
DescriptionAxons in layer 1 of the mouse barrel cortex imaged in vivo.
BibTeX
@article{neocortical_layer_1_axons,
	title = {Cell type-specific structural plasticity of axonal branches and boutons in the adult neocortex},
	author = {De Paola, Vincenzo and Holtmaat, Anthony and Knott, Graham and Song, Sen and Wilbrecht, Linda and Caroni, Pico and Svoboda, Karel},
	journal = {Neuron},
	volume = {49},
	number = {6},
	pages = {861--875}
	year = {2006},
	doi = {10.1016/j.neuron.2006.02.017},
}
MetadataNRRD (detached header)
AcknowledgementV De Paola, MRC Clinical Sciences Center, Imperial College London
Data typeuint8
Spacing1x1x3.4
SHA-5129c4b596a0682c42d1ed30f4d1da84098b1f13a03fb51ed1da3e57871b59fa7ad82bbacd3c08e1b951ddfec4e19bfcbb3493b1488769a3f2effa1369560d9f80d